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Case Study: Real-time Diagnostics from Nanopore DNA Sequencers

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Michael Shannon
Case Study: Real-time Diagnostics from Nanopore DNA Sequencers

When we are talking about sepsis - the dangerous condition when the body starts to attack its organs and tissues in attempts to fight off the bacteria or other causes - the risk of losing the patient due to sepsis increases by 4% with each hour.

These sequencers stream raw data and generate results within 24 hours, which is a significant advantage, especially when doctors need to identify pathogenic species and antibiotic resistance profile.

About the Project: Nanopore DNA Sequencers

Our team worked on the cloud-based solution for the Nanopore DNA Sequencing, and we have developed a Cloud Dataflow integrated with the following technologies:

Cloud Datastore and App Engine

The pipeline itself consists of the following elements:

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Michael Shannon
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